SubjectsSubjects(version: 963)
Course, academic year 2013/2014
  
Bioinformatics - N342004
Title: Chemoinformatika
Guaranteed by: Department of Chemistry of Natural Compounds (342)
Faculty: Faculty of Food and Biochemical Technology
Actual: from 2013 to 2015
Semester: winter
Points: winter s.:2
E-Credits: winter s.:2
Examination process: winter s.:
Hours per week, examination: winter s.:1/1, C [HT]
Capacity: unknown / unknown (unknown)
Min. number of students: unlimited
State of the course: taught
Language: Czech
Teaching methods: full-time
Teaching methods: full-time
Level:  
Old code: BINF
Note: course can be enrolled in outside the study plan
enabled for web enrollment
Guarantor: Raich Ivan doc. Dr. Ing.
Is interchangeable with: N342504
Examination dates   Schedule   
Annotation -
The subject covers searching chemical, biochemical, food and other related data and information mainly in commercially available sources and databases as well as in their freely available alternatives on the Internet. Besides this strictly practical aspect, students will familiarize the manner in which chemists exchange information on new findigns, a detailed structure of Chemical Abstracts database as well as peculiarities resulting from usage of chemical structural formulae.
Last update: TAJ342 (18.12.2013)
Aim of the course -

Students will be able to:

Search for chemical compounds, structures, and reactions and various properties thereof

Search for various types of documents - articles, books, patents

Select the optimum search strategy for literature search

Effectively work with literature references in chemistry

Last update: TAJ342 (29.09.2013)
Literature -

R: Gasteiger J., Engel T., Eds.:Chemoinformatics, Wiley-VCH, Weinheim 2004 (http://onlinelibrary.wiley.com/book/10.1002/3527601643;jsessionid=EFEE61689F5CD035A7CB9AE5291EDEB8.d02t01)

Last update: TAJ342 (29.09.2013)
Syllabus -

1. Basic concepts, cycle of information dissemination in chemistry, writing of laboratory notes

2. Publication process in chemistry, primary documents, electronic and printed journal at ICT Prague, their types

3. Bibliographic reference, identification codes, secondary information sources, work out of literature searches

4. Chemical Abstracts - history, structuring, electronic databases, SciFinder

5. SciFinder - searching alphanumeric data, multi-criteria queries, data export

6. SciFinder - searching structures and reactions, substructure searching, generic atoms and groups

7. Beilstein compendium - history, available data, Reaxys electronic version, Gmelin

8. Citation databases, Web of Science, cited and citing references, Scopus

9. FSTA, Biology Abstracts, FoodNetBase, materials safety data sheets (MSDS)

10. Other structure and reaction databases, other data providers, chemical information on the Internet

11. Patents - patent protection and patent process

12. Maintaining bibliographic references in EndNote program, data export and import, data structure

13. EndNote - data organization, term lists, filters, styles, usage and outputs

14. Bioinformatics - databases for molecular biology and genetics, molecular modeling

Last update: TAJ342 (29.09.2013)
Learning resources -

Raich I.: Lecture notes and slides

Last update: TAJ342 (29.09.2013)
Registration requirements -

Applications of Computer Science

Last update: TAJ342 (29.09.2013)
Teaching methods
Activity Credits Hours
Obhajoba individuálního projektu 0.5 14
Účast na přednáškách 0.5 14
Práce na individuálním projektu 0.5 14
Účast na seminářích 0.5 14
2 / 2 56 / 56
Coursework assessment
Form Significance
Regular attendance 20
Continuous assessment of study performance and course -credit tests 80

 
VŠCHT Praha