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The course focuses on extending and deepening the theoretical knowledge acquired in Bioengineering I and its application to bioengineering data processing. Practical examples are used to gradually build the knowledge and skills apparatus for the individual steps towards achieving industrial implementation of bioprocesses - planning, processing, interpretation, scale-up/scale-down and modelling of bioengineering data from different scales of bioprocess. The course is primarily focused on acquiring knowledge and practical skills for the engineering implementation of individual phases of the bioprocess and the bioprocess as a whole.
Last update: Halecký Martin (20.01.2026)
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Attendance lectures and exercises is a prerequisite for obtaining credit. An integral part of the teaching is an e-learning course divided into blocks with comprehensive course materials, including supporting materials and written and video tutorials for the software tools used. Consultations are provided upon request. Last update: Halecký Martin (20.01.2026)
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Last update: Halecký Martin (20.01.2026)
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Lectures with practical cases and derivation of mathematical relationships and engineered solutions with an emphasis on understanding the complexity and the necessity of synthesizing previously and newly acquired knowledge and skills. Exercises with jointly solved case studies, which are followed by individually solved case studies using software tools in the PC classroom. Students apply theoretical knowledge from lectures in the solution of gradually developing and interconnected partial case studies in the final covering the entire structure of the bioprocess from experiment planning to modeling and simulation. Last update: Halecký Martin (20.01.2026)
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The exam is based on an oral form. A team of students presents a solved case study of a complex bioengineering task followed by a discussion. The condition for granting credit is active participation in lectures and seminars. A student may miss a maximum of two lectures and exercises without an excuse. With a relevant excuse of over 60% participation, credit can be obtained for the standard protocol and defense of the project in a team. With a relevant excuse of under 60% participation, credit can only be obtained for an individual protocol and defense. The final grade is given by the weighted average of two values obtained during the oral exam: 1. team presentation of the solved individual project (weight 33%) and 2. individual discussion with the student (weight 64%). Last update: Halecký Martin (20.01.2026)
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01. Introduction and analysis of steps to achieve industrial implementation 02. Statistical processing of bioengineering data – Statistica program, descriptive statistics 03. Statistical processing of bioengineering data – hypothesis testing 04. Desing of experiments 05. Desing and evaluation of microscale experiments 06. Desing and evaluation of experiments in Erlenmeyer flasks, scale-up 07. Desing and evaluation of experiments in bioreactor, scale-up 08. Desing and evaluation of experiments in pilot bioreactor, scale-up and scale-down 09. Matlab and Simulink as advanced tools for modelling and simulation of bioengineering data 10. Mass model of bioprocess and simulation 11. Mass model of oxygen transfer and simulation 12. Heat transfer model and simulation 13. AI in biotechnology and bioengineering applications 14. Presentation of group projects Last update: Halecký Martin (20.01.2026)
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After completing this course, students will be able to analyze and design experiments to obtain bioengineering data, optimize and statistically evaluate bioengineering data for different scales of bioprocesses using Statistica software, model and simulate bioprocesses (mass and heat balance) using MATLAB, design a suitable production process to achieve industrial implementation of bioprocesses. Last update: Halecký Martin (20.01.2026)
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Entrance requirements within the scope of the curriculum of the subjects Chemical Engineering A or Chemical Engineering I and Biochemistry A or Biochemistry I and Bioengineering I. Last update: Halecký Martin (20.01.2026)
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| Teaching methods | ||||
| Activity | Credits | Hours | ||
| Konzultace s vyučujícími | 0.2 | 6 | ||
| Obhajoba individuálního projektu | 0.1 | 3 | ||
| Účast na přednáškách | 1.5 | 42 | ||
| Příprava na přednášky, semináře, laboratoře, exkurzi nebo praxi | 1 | 28 | ||
| Práce na individuálním projektu | 0.4 | 11 | ||
| Příprava na zkoušku a její absolvování | 0.8 | 22 | ||
| 4 / 4 | 112 / 112 | |||
| Coursework assessment | |
| Form | Significance |
| Defense of an individual project | 34 |
| Oral examination | 66 |

