SubjectsSubjects(version: 853)
Course, academic year 2019/2020
  
Environmental Microbiology - AM320045
Title: Environmental Microbiology
Guaranteed by: Department of Biochemistry and Microbiology (320)
Actual: from 2019
Semester: winter
Points: winter s.:4
E-Credits: winter s.:4
Examination process: winter s.:
Hours per week, examination: winter s.:2/1 Ex [hours/week]
Capacity: 50 / 50 (unknown)
Min. number of students: unlimited
Language: English
Teaching methods: full-time
Level:  
For type: Master's (post-Bachelor)
Note: course can be enrolled in outside the study plan
enabled for web enrollment
Guarantor: Uhlík Ondřej doc. Ing. Ph.D.
Interchangeability : M320045
This subject contains the following additional online materials
Annotation
Last update: Uhlík Ondřej doc. Ing. Ph.D. (23.04.2018)
The aim of the classes is to familiarize students with the microbial diversity in different environments as well as processes typical of the particular environment. The major items of interest will involve the biosphere formation, microbial diversity and its analysis, biogeochemical cycles, biodegradation and bioremediation.
Aim of the course
Last update: Uhlík Ondřej doc. Ing. Ph.D. (23.04.2018)

Student will understand the basics of microbial processes proceeding in the environment and their implications for maintaining equilibrium in the biosphere. In addition, students will acquire both theoretical and practical knowledge in the field of microbial diversity analyses.

Literature
Last update: Uhlík Ondřej doc. Ing. Ph.D. (23.04.2018)

Michael T. Madigan,‎ Kelly S. Bender,‎ Daniel H. Buckley,‎ W. Matthew Sattley,‎ David A. Stahl: Brock Biology of Microorganisms; Pearson 2017. ISBN-13: 978-0134261928, ISBN-10: 0134261925

Eugene L. Madsen: Environmental Microbiology: From Genomes to Biogeochemistry; John Wiley & Sons 2011. ISBN 1444357980, 9781444357981

Terry Gentry, Raina M. Maier, Ian L. Pepper, Charles P. Gerba: Environmental Microbiology; Academic Press 2008. ISBN 0123705193, 9780123705198.

Wen-Tso Liu, Janet K. Jansson: Environmental Molecular Microbiology; Horizon Scientific Press 2010. ISBN 1904455522, 9781904455523.

Learning resources
Last update: Uhlík Ondřej doc. Ing. Ph.D. (23.04.2018)

https://www.frontiersin.org/journals/microbiology

http://www.nature.com/ismej/index.html

http://eu.wiley.com/WileyCDA/WileyTitle/productCd-EMI.html

http://aem.asm.org/

http://rdp.cme.msu.edu

http://umbbd.ethz.ch/

http://fungene.cme.msu.edu

Syllabus
Last update: Uhlík Ondřej doc. Ing. Ph.D. (23.04.2018)

1. Biosphere formation.

2.-3. Microbial diversity and its levels, analysis of microbial diversity, phylogenetic markers, metagenomics and other "-omics" in environmental microbiology.

4. Microbial fueling.

5. Structure and organization of microbial communities.

6. Microbial interactions.

7. Communication of microorganisms, quorum sensing, biofilms.

8.-10. Biogeochemical cycles of carbon, nitrogen, sulfur, iron, halogens, role of microorganisms in these cycles, biocorosion.

11. Contamination of the environment, classification of pollutants, persistent organic pollutants.

12. Metabolic logic, cometabolism, evolution of biodegradation pathways, biodegradation of persistent compounds.

13. Bioremediation - methods using microorganisms to remove xenobiotics from the environment.

14. New trends in environmental microbiology.

Entry requirements
Last update: Uhlík Ondřej doc. Ing. Ph.D. (23.04.2018)

Basic (bachelor-level) knowledge of biochemistry and microbiology

Course completion requirements
Last update: Uhlík Ondřej doc. Ing. Ph.D. (23.04.2018)

Presentation on selected topic

Oral exam

Teaching methods
Activity Credits Hours
Obhajoba individuálního projektu 0 1
Účast na přednáškách 1 28
Práce na individuálním projektu 0,5 13
Příprava na zkoušku a její absolvování 2 56
Účast na seminářích 0,5 14
4 / 4 112 / 112
Coursework assessment
Form Significance
Defense of an individual project 20
Oral examination 80

 
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