SubjectsSubjects(version: 955)
Course, academic year 2019/2020
  
Environmental microbiology - M320016
Title: Mikrobiologie životního prostředí
Guaranteed by: Department of Biochemistry and Microbiology (320)
Faculty: Faculty of Food and Biochemical Technology
Actual: from 2019 to 2022
Semester: winter
Points: winter s.:4
E-Credits: winter s.:4
Examination process: winter s.:
Hours per week, examination: winter s.:2/1, C+Ex [HT]
Capacity: 20 / 20 (unknown)
Min. number of students: unlimited
State of the course: taught
Language: Czech
Teaching methods: full-time
Teaching methods: full-time
Level:  
Note: course can be enrolled in outside the study plan
enabled for web enrollment
Guarantor: Uhlík Ondřej prof. Ing. Bc. Ph.D.
Interchangeability : N320043
Examination dates   Schedule   
This subject contains the following additional online materials
Annotation -
The aim of the classes is to familiarize students with the microbial diversity in different environments as well as processes typical of the particular environment. The major items of interest will involve the biosphere formation, microbial diversity and its analysis, biogeochemical cycles, biodegradation and bioremediation.
Last update: Uhlík Ondřej (17.01.2018)
Aim of the course -

Student will understand the basics of microbial processes proceeding in the environment and their implications for maintaining equilibrium in the biosphere. In addition, students will acquire both theoretical and practical knowledge in the field of microbial diversity analyses.

Last update: Uhlík Ondřej (17.01.2018)
Literature -

Z: Michael T. Madigan,‎ Kelly S. Bender,‎ Daniel H. Buckley,‎ W. Matthew Sattley,‎ David A. Stahl: Brock Biology of Microorganisms; Pearson 2017. ISBN-13: 978-0134261928, ISBN-10: 0134261925

Z: Eugene L. Madsen: Environmental Microbiology: From Genomes to Biogeochemistry; John Wiley & Sons 2011. ISBN 1444357980, 9781444357981

Z: Terry Gentry, Raina M. Maier, Ian L. Pepper, Charles P. Gerba: Environmental Microbiology; Academic Press 2008. ISBN 0123705193, 9780123705198.

D: Wen-Tso Liu, Janet K. Jansson: Environmental Molecular Microbiology; Horizon Scientific Press 2010. ISBN 1904455522, 9781904455523.

Last update: Uhlík Ondřej (17.01.2018)
Learning resources -

https://www.frontiersin.org/journals/microbiology

http://www.nature.com/ismej/index.html

http://eu.wiley.com/WileyCDA/WileyTitle/productCd-EMI.html

http://aem.asm.org/

http://rdp.cme.msu.edu

http://umbbd.ethz.ch/

http://fungene.cme.msu.edu

Last update: Uhlík Ondřej (17.01.2018)
Syllabus -

1. Biosphere formation.

2.-3. Microbial diversity and its levels, analysis of microbial diversity, phylogenetic markers, metagenomics and other "-omics" in environmental microbiology.

4. Microbial fueling.

5. Structure and organization of microbial communities.

6. Microbial interactions.

7. Communication of microorganisms, quorum sensing, biofilms.

8.-10. Biogeochemical cycles of carbon, nitrogen, sulfur, iron, halogens, role of microorganisms in these cycles, biocorosion.

11. Contamination of the environment, classification of pollutants, persistent organic pollutants.

12. Metabolic logic, cometabolism, evolution of biodegradation pathways, biodegradation of persistent compounds.

13. Bioremediation - methods using microorganisms to remove xenobiotics from the environment.

14. New trends in environmental microbiology.

Last update: Uhlík Ondřej (04.02.2018)
Registration requirements -

Biochemistry

Microbiology

Last update: Uhlík Ondřej (17.01.2018)
Course completion requirements -

Presentation on selected topic

Oral exam

Last update: Uhlík Ondřej (25.01.2018)
Coursework assessment
Form Significance
Defense of an individual project 20
Oral examination 80

 
VŠCHT Praha